The sweet potato (Ipomoea batatas) is a storage root whose thin, delicate skin makes it susceptible to various forms of discoloration. Finding brown spots on the surface or internal flesh is common and often raises questions about quality and safety. These spots typically result from mechanical damage, environmental conditions, or microscopic organisms. Determining whether the root is safe to consume depends entirely on the cause, depth, and extent of the damage.
Distinguishing the Causes of Brown Spots
The brown or black spots observed on sweet potatoes fall into three types: enzymatic, fungal, or physiological. Enzymatic browning occurs when the root’s cellular structure is broken, such as through bruising or cutting. This damage releases the enzyme polyphenol oxidase (PPO), which reacts with phenolic compounds and oxygen to create dark pigments. This type of brown spot is purely cosmetic, similar to the browning on an apple, and does not pose a safety risk.
Discoloration caused by fungal pathogens can affect both the surface and the interior. Scurf, caused by the fungus Monilochaetes infuscans, presents as superficial purplish-brown to black blotches limited entirely to the skin. Black rot, caused by Ceratocystis fimbriata, is more serious, appearing as circular, sunken, dark spots that extend into the tissue. This rot often gives the adjacent area a noticeably bitter taste.
Physiological disorders result from environmental stress rather than a pathogen. Internal necrosis is a non-pathogen-related issue that manifests as black spots or patches within the flesh, often concentrated near the stem end. Chilling injury occurs when sweet potatoes are exposed to temperatures below 55°F (12.5°C). This cold damage can lead to internal pithy, dark discolorations or a condition called “hardcore,” where parts of the root become unnaturally hard after cooking.
Determining Edibility and Safety
Edibility depends on the severity and nature of the discoloration. Superficial spots, such as those resulting from enzymatic oxidation or the scurf fungus, are safe to consume. These minor spots are only skin-deep and can be trimmed away before cooking, leaving the rest of the flesh unaffected in texture and taste. Internal necrosis is also a quality issue, not a safety hazard, meaning the spots can be cut out and the remaining portion of the root used.
The primary concern involves deep, soft, or foul-smelling rot, which indicates active microbial decay. If a spot is soft, moist, or has an unpleasant odor, it is likely a soft rot caused by an organism like Rhizopus stolonifer, and the entire root should be discarded. This deep decay suggests spoilage has progressed too far to be reliably trimmed or that toxins may be present. In the case of black rot, the affected areas and surrounding flesh should be discarded because the fungus often imparts a bitter flavor.
Proper Storage and Prevention
Preventing brown spots relies on proper handling and storage conditions. The most common mistake is storing sweet potatoes in the refrigerator, which causes chilling injury. Temperatures below 55°F (12.5°C) initiate internal physiological breakdown, leading to dark spots and a hardened texture upon cooking.
The ideal storage environment is a cool, dark, and dry location, such as a pantry, where temperatures remain between 55°F and 59°F (12.5°C and 15°C). Handle the roots gently, as the thin skin is easily bruised. Mechanical damage quickly leads to enzymatic browning and provides entry points for decay organisms. Do not wash sweet potatoes until immediately before preparing them, as excess moisture encourages the growth of spoilage fungi during storage.

