The common cold is an infection of the upper respiratory tract, typically characterized by symptoms like a runny nose, sneezing, and coughing. While the digestive tract is not the primary site of infection, an upset stomach is a frequently reported secondary symptom. A cold can cause digestive distress—such as mild nausea, stomach pain, or loose stools—but this effect is usually indirect. The underlying cause often relates to mechanical irritation rather than the cold virus actively infecting the stomach or intestines.
The Direct Physical Connection
The most common mechanism linking a cold to an upset stomach involves excess respiratory secretions. When the body fights a cold virus, it produces a large volume of mucus in the nasal passages and sinuses. This mucus, which contains inflammatory mediators and viral debris, often drains down the back of the throat in a process known as post-nasal drip.
When this substantial amount of mucus is swallowed, it enters the gastrointestinal (GI) tract. The stomach recognizes the thick, foreign material as an irritant, which can trigger a protective reaction resulting in mild-to-moderate nausea or a general feeling of queasiness.
In some cases, particularly with children, this irritation can be severe enough to cause vomiting. As the mucus moves through the intestines, the irritant effect continues, sometimes leading to loose stools or mild diarrhea. This physical drainage and subsequent irritation of the stomach lining is the most direct way a respiratory infection causes digestive upset.
Immune System Reaction and Treatment Side Effects
Beyond the mechanical irritation of swallowed mucus, the body’s systemic response to the virus can also influence digestive function. When the immune system detects a virus, it releases chemical messengers, resulting in widespread inflammation. This generalized inflammatory state can lead to a temporary slowing of gastrointestinal motility or systemic discomfort, which may manifest as a mild loss of appetite or nausea.
Medication Side Effects
A common cause of stomach upset during a cold is the medication used for symptom relief. Many over-the-counter cold remedies contain non-steroidal anti-inflammatory drugs (NSAIDs) like ibuprofen, which are used to treat fever and body aches. These medications are known to irritate the stomach lining and can cause side effects such as nausea, indigestion, or stomach cramping.
Decongestants, which work by constricting blood vessels in the nasal passages, can also cause mild GI side effects. Taking these medications on an empty stomach can increase the likelihood of experiencing these digestive disturbances.
Differentiating Between a Cold and the Stomach Flu
When stomach symptoms accompany a respiratory infection, it is important to distinguish between a secondary cold effect and a primary gastrointestinal infection, often mislabeled as the “stomach flu.” Cold-related GI symptoms are typically mild and secondary, meaning they follow the onset of clear respiratory symptoms like congestion and sore throat. Nausea and diarrhea are usually minor and resolve as the upper respiratory symptoms improve.
In contrast, true viral gastroenteritis, commonly caused by viruses like norovirus, is a severe and primary infection of the stomach and intestines. Symptoms of the stomach flu begin abruptly and focus overwhelmingly on the digestive system, involving explosive vomiting, severe watery diarrhea, and intense abdominal cramps. Respiratory symptoms are usually absent or minor in these cases.
Symptom severity is the clearest differentiator: a cold may cause mild nausea and slight diarrhea, while the stomach flu causes debilitating and sudden GI distress. If your symptoms include a high fever, the inability to keep liquids down, or signs of dehydration such as dark urine or extreme thirst, you should seek professional medical attention. These signs suggest an illness more serious than a simple cold side effect.

