Chlamydia is a common sexually transmitted infection (STI) caused by the bacterium Chlamydia trachomatis. While often associated with genital and anal areas, the bacteria can also infect the mucous membranes of the throat and mouth, a condition known as pharyngeal chlamydia. Transmission occurs through sexual contact. Understanding how this happens, what symptoms to watch for, and the specific testing required is important for managing sexual health.
Understanding Oral Transmission
Transmission of Chlamydia trachomatis to the throat occurs during oral sexual contact with a partner who has a genital chlamydia infection. This happens when the mucous membranes of the mouth and throat contact infectious genital fluids, such as semen, pre-ejaculate, or vaginal fluid. The bacteria are site-specific, meaning a throat infection is distinct from a genital one, though both can occur simultaneously. Transmission risk exists even without ejaculation, as the bacteria are present in pre-ejaculate and vaginal secretions. Chlamydia is not spread through casual contact like kissing or sharing utensils.
Recognizing Symptoms in the Throat and Mouth
The majority of people with pharyngeal chlamydia will not experience noticeable symptoms, which is the most common presentation for this infection. This asymptomatic nature allows the infection to often go undetected and continue transmission. When symptoms do manifest, they typically present as a mild to severe sore throat that may be persistent. Other signs include redness in the throat, difficulty or pain when swallowing, and inflammation of the tonsils. These non-specific symptoms are frequently mistaken for a common cold or strep throat, which can delay the correct diagnosis.
Testing and Diagnosis
Diagnosing pharyngeal chlamydia requires a specific sample collection method because standard urine tests or genital swabs will not detect an infection localized to the throat. Patients must communicate clearly to a healthcare provider that oral exposure occurred so the correct test can be ordered. The procedure involves taking a throat or pharyngeal swab, where an applicator is gently brushed across the back of the throat and tonsil areas. The collected sample is analyzed using Nucleic Acid Amplification Tests (NAATs), which detect the genetic material of the Chlamydia trachomatis bacteria. While routine screening for oral chlamydia is not universally recommended, testing is advised for those with known exposure or specific risk factors, such as men who have sex with men.
Treatment and Prevention Strategies
Chlamydia infection in the throat is curable with a course of antibiotics. The preferred treatment is typically a seven-day course of doxycycline, or a single, higher dose of azithromycin. Patients must take all medication as prescribed, even if symptoms begin to clear quickly. To prevent transmission, individuals must abstain from all sexual activity, including oral sex, until the medication is completed and at least seven days have passed since the last dose. Sexual partners from the previous 60 days should be notified for testing and treatment, and retesting is generally recommended about three months later, as reinfection is common.
Prevention relies on the consistent use of barrier methods during oral sex. Using a latex condom or a dental dam—a thin latex or plastic sheet—over the vagina or anus can significantly reduce the risk of bacterial transmission. Regular STI screening, especially for those with multiple or new partners, remains the most effective strategy for early detection and stopping the spread of chlamydia.

