Melatonin is a hormone naturally produced by the pineal gland, primarily known for regulating the body’s sleep-wake cycle, or circadian rhythm. Since it became widely available as an over-the-counter supplement, millions of people use it to manage sleep disturbances or jet lag. The hormone’s influence extends far beyond the brain, affecting various systems throughout the body. Given its widespread use, a common question arises regarding its potential to disrupt digestive processes. Melatonin may cause constipation because this sleep aid interacts with mechanisms that govern the gastrointestinal tract.
Melatonin’s Role in Gut Motility
The gastrointestinal (GI) tract is the body’s largest producer of melatonin, generating quantities that far exceed those made in the brain. This locally produced melatonin functions as a paracrine hormone, regulating digestive activities. Receptors for melatonin (MT1, MT2, and MT3 types) are found throughout the gut’s smooth muscle tissue.
Gut motility, the movement of food through the digestive system, is regulated by the enteric nervous system and signaling molecules. Serotonin (5-HT) primarily stimulates the muscle contractions necessary to propel waste toward the colon. Melatonin, which is structurally related to serotonin, acts as a functional counterbalance to this system.
When supplemental melatonin is introduced, especially at higher doses, it binds to receptors on the colon’s smooth muscle cells. This binding inhibits the spontaneous contractions of the intestinal muscle. By dampening the muscular activity that pushes waste along, exogenous melatonin slows the overall transit time.
This physiological slowdown in the large intestine is the mechanism that can result in constipation. While low doses (0.5 to 1 mg) might sometimes accelerate transit, higher doses (5 mg and above) are more frequently associated with this inhibitory effect. This disruption of the natural balance between stimulating and inhibiting signals causes the change in bowel habits.
How to Identify and Manage Constipation While Taking Melatonin
Identifying whether melatonin causes constipation requires careful self-observation, as other factors frequently contribute to changes in bowel habits. Track the onset of symptoms, noting if they began shortly after starting the supplement or increasing the dosage. It is important to rule out common alternative causes, such as dehydration, a sudden reduction in dietary fiber, or the initiation of other medications.
If melatonin is suspected, adjusting the dosage is the most effective first step toward management. Higher doses, often 5 milligrams or more, are reported to be more likely to cause this digestive side effect. Experts recommend beginning with the lowest effective dose, typically between 0.5 and 1 milligram, and only increasing it if sleep benefits are not achieved.
Adjustments to lifestyle habits can also provide significant relief from supplement-related constipation.
Lifestyle Adjustments
Increasing the daily intake of water helps keep stool soft and easier to pass, counteracting the drying effect of slower transit. Incorporating more fiber-rich foods, such as fruits, vegetables, and whole grains, adds bulk to the stool and stimulates movement through the colon. Regular physical activity also supports gut motility by stimulating the intestinal muscles.
Taking the supplement earlier in the evening or adjusting the timing relative to meals may also improve absorption and minimize digestive discomfort. If constipation persists for more than a week, or if symptoms include severe abdominal pain, inability to have a bowel movement for over 72 hours, or blood in the stool, medical consultation is necessary. These severe symptoms require professional evaluation to ensure there is no underlying condition.
Other Gastrointestinal Side Effects of Melatonin
Melatonin’s wide-ranging influence on the digestive system means that constipation is not the only potential gastrointestinal side effect. The supplement’s interaction with smooth muscle and signaling receptors in the gut can produce a spectrum of other mild digestive issues. These effects are generally uncommon and mild, but they are consistently reported by some users.
Nausea and stomach cramps are frequently mentioned among the list of adverse reactions to melatonin supplementation. This discomfort is linked to the hormone’s regulatory effect on the gut’s muscular contractions, which can cause temporary irritation or spasms.
In contrast to constipation, some individuals report experiencing mild diarrhea, which is sometimes associated with very low doses of the supplement. This highlights the complex and dose-dependent nature of melatonin’s effect on intestinal transit time. Other minor digestive disturbances include a decreased appetite and the potential for heartburn or reflux.
These various effects underscore that the supplemental hormone actively engages with the digestive tract, and individuals should monitor their response to any new regimen.

