The thyroid gland regulates metabolism through hormone production. Migraine is a complex neurological condition characterized by recurrent episodes of moderate to severe head pain, often accompanied by light and sound sensitivity. Although these conditions affect different body systems, research suggests a physiological connection between thyroid dysfunction and migraine frequency or severity. This article examines the clinical evidence and biological mechanisms linking thyroid disorders to migraine.
The Clinical Link Between Thyroid Disorders and Migraines
The relationship between thyroid problems and migraine is a statistically observed co-occurrence, strongest for an underactive thyroid, known as hypothyroidism. Clinical studies indicate that migraine patients have a higher prevalence of hypothyroidism compared to the general population. Approximately 30.8% of migraine patients have either subclinical or overt hypothyroidism. This figure is significantly higher than the typical rate of thyroid dysfunction found in people without primary headache disorders.
The association appears to be bidirectional. Individuals with a history of migraine, particularly those with frequent attacks, face an increased likelihood of developing new-onset hypothyroidism, with some studies estimating this risk to be elevated by as much as 41%. Furthermore, the severity of the migraine disorder correlates with the thyroid link. Hypothyroidism is more common in patients experiencing chronic migraine (headaches on 15 or more days per month) compared to those with episodic migraine.
A significant portion of this clinical overlap involves Hashimoto’s thyroiditis, the most common cause of hypothyroidism. Hashimoto’s is an autoimmune disorder where the body mistakenly attacks the thyroid gland. The inflammatory nature of this autoimmune process is thought to contribute to the neurological sensitivity characteristic of migraine, suggesting that the underlying immune dysfunction may be a shared factor.
Hormonal and Inflammatory Triggers
The physiological connection between thyroid hormones and migraine pathogenesis involves both the endocrine and immune systems. Thyroid hormones (T3 and T4) have receptors located throughout the brain, including regions involved in pain processing and mood regulation. When these hormones are imbalanced due to thyroid dysfunction, it can disrupt the balance of neurotransmitters that regulate pain perception in the central nervous system.
One key neurotransmitter implicated in this process is serotonin, which helps regulate blood vessel tone and pain pathways. Thyroid hormone fluctuations can affect the production and availability of serotonin; low levels are associated with blood vessel dilation and the release of inflammatory substances that trigger migraine pain. Additionally, patients with thyroid dysfunction often exhibit elevated levels of Calcitonin Gene-Related Peptide (CGRP), a potent neuropeptide that is a direct trigger for migraine attacks.
In autoimmune thyroid conditions like Hashimoto’s, the body’s overactive immune response releases systemic inflammatory markers known as cytokines. These pro-inflammatory cytokines circulate throughout the body and can compromise the integrity of the blood-brain barrier. When the barrier is weakened, these inflammatory mediators can enter the central nervous system, heightening neuroinflammation and increasing the susceptibility to migraine attacks.
Managing Migraines Through Thyroid Regulation
For patients experiencing both conditions, treating the underlying thyroid dysfunction can often lead to a reduction in migraine symptoms. The standard treatment for hypothyroidism involves hormone replacement therapy, typically with the synthetic hormone levothyroxine. This therapy aims to stabilize T3 and T4 levels and normalize the thyroid-stimulating hormone (TSH) levels measured in the blood.
Successfully regulating thyroid function with levothyroxine has been shown to reduce migraine frequency, duration, and intensity. Some studies document that patients with hypothyroidism-attributed headaches experience a significant decrease in headache frequency after thyroid hormone replacement. Treating subclinical hypothyroidism, a milder form of the condition, has also demonstrated success in improving migraine outcomes, even in pediatric patients.
While thyroid regulation often provides substantial relief, it is not a guaranteed cure for migraines, and some individuals may require additional treatments. Furthermore, achieving the correct dose is important because high doses of levothyroxine can sometimes worsen headaches. For optimal health management, patients should seek co-management from both an endocrinologist to regulate the thyroid and a neurologist or headache specialist to address the neurological aspects of the migraine disorder.

