Cannabis root rot is a destructive condition that severely compromises the health of a plant’s root system. It is characterized by the decay and deterioration of the roots, which are responsible for absorbing water and nutrients. Root rot quickly interrupts the plant’s ability to sustain itself, leading to widespread decline. This ailment poses a significant threat to cultivation, whether plants are grown in soil, coco coir, or hydroponic systems.
Recognizing the Symptoms
An infected plant will frequently show signs of sudden wilting and drooping leaves following watering. This wilting occurs because the compromised roots can no longer properly transport moisture to the foliage, mimicking the symptoms of underwatering. Above-ground symptoms also include signs of nutrient deficiencies, such as yellowing, browning, or burnt leaf tips, despite a complete feeding regimen.
A diagnosis requires examining the roots themselves. Healthy cannabis roots are typically bright white or cream-colored, firm, and have a clean, earthy scent. Roots affected by rot, however, will turn brown, gray, or black and develop a slimy, mushy texture. A strong, foul odor will emanate from the root zone due to the anaerobic conditions that promote the decay.
Understanding the Underlying Causes
The most common cause of root rot is overwatering or poor drainage, which creates waterlogged conditions that deplete the root zone of dissolved oxygen. When oxygen is absent, the conditions become anaerobic, causing root cells to suffocate and die. This provides an easy entry point for disease-causing microorganisms.
The primary biological culprits are often water molds, such as various species of Pythium, which thrive in low-oxygen, damp environments. Pythium is a fungus-like organism that infects damaged roots. High temperatures in the growing medium or nutrient reservoir further exacerbate this issue by reducing the amount of oxygen that water can hold. Water temperatures above the ideal range of 68–72°F (20–22°C) dramatically increase the risk of root rot because warm water holds significantly less dissolved oxygen.
Immediate Treatment Protocols
Once root rot is identified, action is necessary to halt the infection and save the plant. In a soilless or hydroponic system, the first step involves removing the infected plant and thoroughly cleaning the root mass. Any roots that are visibly brown, slimy, or mushy should be carefully pruned away using sterilized scissors to prevent the spread of the pathogen. The remaining healthy roots should then be rinsed gently with cool, clean water.
For both soil and hydroponic systems, a chemical intervention is often needed to sanitize the root zone. Food-grade hydrogen peroxide (H₂O₂) acts as an oxidizer, killing harmful bacteria and fungi on contact. When H₂O₂ breaks down, it releases oxygen, which helps re-aerate the root zone and counteracts anaerobic conditions. A common treatment involves using a diluted solution of 3% hydrogen peroxide, which can be applied as a soil drench or added to the nutrient reservoir.
Alternatively, growers can flush the system with beneficial biological agents to outcompete the pathogens. Specialized strains of bacteria, such as Bacillus amyloliquefaciens or Bacillus subtilis, colonize the root zone and suppress disease-causing organisms like Pythium. Beneficial fungi like Trichoderma species can also be introduced, which parasitically feed on harmful fungi, providing natural biocontrol. If the plant is in a pot, repotting it into a fresh, sterile growing medium after treating the roots is beneficial, completely discarding the contaminated old substrate.
Proactive Prevention Strategies
Avoiding root rot requires maintaining an environment that is hostile to pathogens. Managing the wet/dry cycle is paramount, meaning the medium should be allowed to dry out partially between waterings. This practice ensures the root zone receives regular exposure to oxygen, preventing anaerobic conditions. Soil or coco coir should be contained in pots with sufficient drainage holes to allow excess water to escape freely.
Aeration must be maximized, achieved in soil by amending the substrate with porous materials like perlite or coco coir. In hydroponic systems, maintaining high levels of dissolved oxygen is accomplished through the use of strong air pumps and air stones. The temperature of the nutrient solution should be kept within the optimal range of 63–73°F (17–23°C) to maximize oxygen retention and discourage pathogen proliferation.
Good air circulation around the containers helps reduce humidity. Growers should regularly monitor the root zone temperature, as excessive warmth can quickly lead to oxygen depletion and disease. Routine sanitation of reservoirs, tools, and the growing area is also necessary to prevent the introduction or spread of fungal spores and bacteria.

