Lyme disease is an illness caused by the spirochete bacterium Borrelia burgdorferi, which is primarily transmitted to humans through the bite of infected Ixodes ticks. While the infection is widely recognized for its effects on the joints, nervous system, and heart, it is fundamentally a multi-systemic disease that can spread throughout the body. The bacteria’s ability to migrate and trigger a widespread immune response means that the gastrointestinal (GI) tract is also a potential site of involvement. This connection between the tick-borne infection and digestive distress is a significant aspect of the disease.
Specific Gastrointestinal Manifestations
The initial stages of a B. burgdorferi infection can produce a variety of specific symptoms within the digestive system. These gastrointestinal issues are often reported during the acute or early disseminated phases of the disease. Symptoms include generalized abdominal pain, which may present as cramping or discomfort in the stomach region. Patients frequently experience nausea and occasional vomiting, along with a noticeable loss of appetite, sometimes leading to weight loss. Changes in bowel habits are also common, ranging from increased bowel motility causing diarrhea to decreased motility resulting in constipation. A review of early Lyme borreliosis cases indicated that between 5 and 23 percent of patients presented with these varied GI symptoms, including bloating, gas, and heartburn.
Biological Mechanisms of GI Involvement
Lyme disease triggers gastrointestinal problems through a combination of direct bacterial presence, systemic inflammation, and neurological interference.
Direct Infection and Inflammation
The Borrelia spirochetes are highly invasive and can penetrate tissues throughout the body, including the intestinal lining. The presence of B. burgdorferi DNA has been confirmed in GI biopsies, suggesting the bacteria itself can directly infect the stomach and intestinal walls. This direct presence can lead to localized inflammation, manifesting as chronic gastritis (stomach inflammation), duodenitis (small intestine inflammation), or colitis (large intestine inflammation).
Systemic Immune Response
GI issues also arise from the body’s powerful immune reaction to the infection. As the immune system fights the widespread bacteria, it releases inflammatory signaling molecules called cytokines, which circulate throughout the body. This systemic inflammation can irritate the gut lining and disrupt its normal function, contributing to symptoms like pain and altered motility.
Neurogenic Effects
A third mechanism involves the infection’s neurogenic effects on the enteric nervous system (ENS). The ENS is a complex network of nerves embedded in the walls of the gastrointestinal tract that regulates digestive functions like peristalsis. Borrelia has a tendency to attack nervous tissue, and when this affects the ENS, it can paralyze the muscles responsible for moving food. This nerve dysfunction can lead to conditions like gastroparesis, causing nausea, or chronic constipation, which has been referred to as “Bell’s palsy of the gut.”
Addressing Persistent and Post-Treatment Symptoms
For many individuals, digestive issues can persist long after antibiotic treatment for the initial infection has concluded, often falling under the umbrella of Post-Treatment Lyme Disease Syndrome (PTLDS).
Post-Infection Conditions
A common consequence is the development of Small Intestinal Bacterial Overgrowth (SIBO), which involves an excessive amount of bacteria colonizing the small intestine. SIBO is often linked to the motility problems caused by the neurogenic effects of the infection. It frequently causes symptoms similar to Irritable Bowel Syndrome (IBS), such as chronic gas, bloating, and abdominal discomfort. Chronic inflammation and dysbiosis, or an imbalance in the gut’s microbial community, can also lead to increased intestinal permeability, commonly known as “leaky gut syndrome.” This condition allows bacteria and undigested food particles to pass through the compromised gut barrier into the bloodstream, triggering further systemic immune responses and inflammation. Restoring the health of the gut microbiome is often a focus in managing these persistent issues.
Management Strategies
Management strategies for chronic GI sequelae typically involve a multi-pronged approach that targets the underlying dysbiosis and inflammation. Targeted courses of antibiotics may be necessary to treat SIBO, followed by the use of probiotics and prebiotics to help re-establish a healthy balance of gut flora. Dietary modifications are frequently recommended to reduce the inflammatory load and starve out overgrown bacteria. This may include:
- Avoiding foods like gluten and excessive sugar.
- Implementing specialized eating plans such as the low-FODMAP diet to manage symptoms of gas and bloating associated with conditions like SIBO and IBS.

