The Hematoxylin and Eosin (H&E) slide is the most widely used tool in histology and pathology, serving as the foundation for modern tissue diagnosis. This technique involves taking a thin slice of biological tissue, typically from a biopsy or surgery, and mounting it onto a glass slide. The tissue slice is naturally colorless, so it is subjected to a two-part staining process to reveal its cellular architecture. This method provides a consistent color contrast that allows trained professionals to observe the microscopic organization of cells and tissues. The resulting H&E slide helps doctors understand the composition of an organ or a suspected disease.
The Chemical Basis of Color
The distinctive pink and purple coloration of an H&E slide is achieved through a chemical attraction between the dyes and specific cellular components. This differential staining relies on two primary compounds: hematoxylin and eosin. Hematoxylin, which acts like a basic or positively charged dye after being combined with a metal salt known as a mordant, targets acidic structures within the tissue.
These acidic structures, referred to as basophilic components, are primarily the cell nuclei, which contain the negatively charged nucleic acids (DNA and RNA). The cell nuclei and the chromatin material within them are stained a purplish-blue color. This nuclear staining is useful because the nucleus is often the first part of the cell to show changes when disease is present.
The second dye, eosin, is an acidic compound, meaning it carries a negative charge. Eosin is attracted to positively charged, or acidophilic, components, which are predominantly the proteins found in the cell’s cytoplasm and the surrounding extracellular matrix. This chemical binding causes these structures, including muscle fibers, collagen, and red blood cells, to appear in various shades of pink or red. The contrasting blue nuclei and pink cytoplasm allow for a clear differentiation between the two main compartments of a cell, providing a comprehensive overview of the tissue’s structure.
Preparing the Tissue Sample
Transforming a raw tissue specimen into a stained slide requires a series of precise steps. The initial step is fixation, where the tissue, often a biopsy, is immersed in a preservative solution, most commonly formalin. Fixation halts biological decay and cross-links proteins, which preserves the tissue’s morphology and prevents autolysis, ensuring cellular structures remain intact for later examination.
Once fixed, the tissue must be prepared for thin slicing, a process that requires it to be hardened and supported. This is achieved through the embedding process, beginning with dehydration, where all water is gradually removed by passing the tissue through increasingly concentrated alcohol solutions. The tissue is then exposed to a clearing agent, which is miscible with the final embedding medium, typically melted paraffin wax.
The tissue is infiltrated with the melted wax, which then solidifies into a block, providing a firm matrix that supports the cellular structures. This paraffin block is mounted onto a microtome, which uses a sharp blade to cut the tissue into extremely thin sections, usually between 4 and 5 micrometers. These nearly transparent sections are floated onto a warm water bath and then mounted onto a glass microscope slide, ready for the dyes.
Reading the Stained Slide
The finished H&E slide provides a visual map of the tissue’s architecture. A pathologist interprets this map by assessing the morphology of the cells, which refers to their shape, size, structure, and organization within the tissue. The contrast between the purplish-blue nuclei and the pink cytoplasm makes it possible to distinguish healthy, organized tissue from abnormal tissue.
When viewing a slide, the pathologist looks for specific features, such as the size and contour of the cell nuclei, which should be uniform and proportional to the cytoplasm. In diseased states, particularly cancer, nuclei often become larger, more irregularly shaped, or appear densely packed (hyperchromasia). The arrangement of cells is also scrutinized; a disruption in the expected pattern, such as a cell type breaking through a natural boundary, can indicate disease progression.
The pink-staining components, including the extracellular matrix and cytoplasm, are important for interpretation. Different tissue types, such as muscle or connective tissue, stain with varying intensities of pink, which helps identify specific components. Analyzing the overall pattern and distribution of these colors helps the pathologist recognize structural abnormalities. These include excessive collagen deposition in fibrosis or the presence of inflammatory cells gathering in response to infection.
Primary Role in Disease Diagnosis
H&E staining is the standard technique in clinical medicine for the routine evaluation of tissue samples. It is the primary method for diagnosing a wide range of diseases, establishing a foundational understanding of the underlying pathology. The information it provides on cellular and tissue structure is often sufficient to render a definitive diagnosis.
The technique is important in the diagnosis of cancer, as the interpretation of nuclear changes, cell crowding, and invasion patterns directly guides treatment planning. Beyond oncology, H&E slides are used to identify inflammation, structural disorders like cirrhosis, and the presence of microorganisms. Because the staining process is cost-effective, simple, and provides a comprehensive overview of the tissue, it remains the preferred initial diagnostic step in laboratories worldwide.

