Hematoxylin and Eosin (H&E) staining is the foundational method in the microscopic study of tissue, known as histology, and its application in medical diagnosis. This technique provides contrast to tissue samples, making their cellular architecture visible under a microscope. Since its introduction in 1877, H&E staining has remained the most widely used procedure in histopathology laboratories globally. Its reliability, speed, and ability to reveal anatomical detail establish it as the standard for routine tissue examination.
The Essential Components
The technique is named for the two distinct dyes it employs: hematoxylin and eosin. Hematoxylin is a natural product, historically derived from the logwood tree, Haematoxylum campechianum. In its raw form, hematoxylin is not a true dye; it must be oxidized and combined with a metal compound, called a mordant (typically an aluminum salt), to become the active staining agent hematein.
The second component, eosin, is a synthetic, acidic dye, usually appearing as a vibrant pink or red powder. These two dyes are chemical opposites, which is the underlying principle allowing them to highlight different parts of the cell.
The Staining Mechanism
The process of H&E staining relies on the chemical principle of acid-base attraction between the dyes and the tissue components. Hematoxylin, after complexing with a mordant, acts as a positively charged (basic) dye. This cationic nature causes it to bind with negatively charged (acidic) cellular structures.
Tissue components that have an affinity for a basic dye are termed basophilic. The most prominently basophilic structures are the nucleic acids, specifically the DNA in the nucleus and the RNA in ribosomes and the rough endoplasmic reticulum. The phosphate groups in the nucleic acid backbone carry the strong negative charge that draws the positively charged hematoxylin complex.
Conversely, eosin is an anionic (negatively charged) acidic dye. Eosin binds with positively charged (basic) structures within the tissue, which are known as acidophilic.
Most proteins in the cytoplasm and the extracellular matrix contain many positively charged amino acid residues. Eosin binds to these basic proteins, thereby staining the non-nuclear structures of the cell. This simultaneous staining of chemically opposite structures provides the comprehensive contrast necessary for microscopic analysis.
Interpreting the Colors
The chemical affinities translate into a predictable color pattern that allows for the identification of cellular components. Hematoxylin binding results in a purplish-blue color, highlighting structures containing nucleic acids. Therefore, the cell nucleus, which houses the DNA, is stained deep blue or purple.
Other structures with high concentrations of RNA, such as the nucleoli and the rough endoplasmic reticulum, also take on the blue color. This staining provides the pathologist with a clear view of the nuclear size, shape, and chromatin pattern.
Eosin binding results in colors ranging from various shades of pink to red. This pink coloration marks the cytoplasm of the cell, which is largely composed of proteins. Structures outside the cell, such as collagen in the connective tissue and muscle fibers, also stain pink or red. Red blood cells, packed with hemoglobin protein, display an intense red color due to their strong acidophilic nature.
Role in Medical Diagnosis
The color contrast produced by H&E staining allows pathologists to identify disease by assessing two main features: cellular morphology and tissue architecture. Cellular morphology involves scrutinizing the individual cell’s shape, the size of its nucleus, and the ratio of the nucleus to the surrounding cytoplasm.
Changes in the cell’s internal structure, particularly the nucleus, can indicate disease. For example, in many cancers, cells display a high nuclear-to-cytoplasmic ratio, meaning the blue-stained nucleus is disproportionately large compared to the pink-stained cytoplasm. Pathologists also look for pleomorphism (variation in cell shape and size) and abnormal organization, such as cells invading surrounding structures.
H&E staining reveals the overall structural organization of an organ or tissue, providing crucial context for diagnosis. While specialized stains exist, the H&E slide shows the general layout and distribution of cells. It acts as a screening tool, allowing a broad range of histopathologic conditions, including infections, inflammation, and tumors, to be diagnosed or further investigated.

