The genetic blueprint for any organism is stored within its chromosomes, which are tightly coiled structures of DNA and protein found inside the nucleus of nearly every cell. Each species maintains a fixed number of chromosomes, a trait fundamental to its identity. This defined count ensures that when reproductive cells combine, the resulting offspring receives the correct set of genetic instructions.
The Specific Chromosome Count
The domestic horse, scientifically known as Equus caballus, possesses a total of 64 chromosomes. This number represents the diploid count, meaning the chromosomes exist in pairs, with one set of 32 chromosomes inherited from each parent. These 64 chromosomes are composed of 31 pairs of autosomes and one pair of sex chromosomes.
Autosomes carry the genetic information for all physical traits not directly related to sex determination. Sex chromosomes determine the animal’s gender. This precise count of 64 is the standard for the species, and any deviation can lead to developmental problems or fertility issues. For example, the closely related Przewalski’s horse (Equus przewalskii) has 66 chromosomes, but its offspring with domestic horses are fertile.
How Chromosomes Determine Sex
Sex determination in horses follows the familiar mammalian system, relying on the combination of X and Y sex chromosomes. A female horse, or mare, carries two X chromosomes (XX). A male horse, or stallion, possesses one X and one Y chromosome (XY).
During reproduction, the mare contributes only an X chromosome to the fertilized egg. The stallion’s sperm, however, carries either an X or a Y chromosome, which determines the sex of the foal. If the sperm contributes an X chromosome, the resulting foal will be female (XX). If it contributes a Y chromosome, the foal will be male (XY).
The Genetics of Hybridization
The horse’s chromosome count plays a significant role when it interbreeds with other species, most commonly the donkey, which has a different genetic makeup. A donkey, or Equus asinus, has a diploid number of 62 chromosomes.
When a male donkey (jack) is bred with a female horse (mare), the resulting hybrid is a mule. The mule inherits 32 chromosomes from the horse parent and 31 from the donkey parent, giving it a total of 63 chromosomes. Similarly, a hinny, the offspring of a male horse (stallion) and a female donkey (jenny), also possesses 63 chromosomes. This odd, uneven number of 63 is the reason mules and hinnies are typically sterile.
For an animal to produce viable reproductive cells, the chromosomes must be able to pair up evenly during meiosis. The mule’s 63 chromosomes consist of 31 complete pairs and one unpaired chromosome, which prevents the proper alignment and division necessary for forming functional sperm or eggs. This genetic incompatibility is what biologically defines the mule and hinny as hybrids rather than true species.

