How to Do Medical Billing: A Step-by-Step Process

Medical billing is the process of translating a healthcare visit into a financial claim, submitting it to an insurance company, and collecting payment. It follows a predictable cycle: gather patient information, assign the right codes, submit the claim, and follow up until the provider gets paid. Each step has specific tools, rules, and potential pitfalls. Here’s how the entire process works from start to finish.

Step 1: Collect Patient and Insurance Information

Every billing cycle starts before the patient sees the provider. Front desk staff or intake coordinators collect the patient’s demographics, insurance card details, group number, and policy information. This is also the stage where you verify insurance eligibility, confirming that the patient’s coverage is active and checking whether the planned service requires prior authorization.

Skipping verification is one of the fastest ways to get a claim denied. About 7% of in-network claim denials happen simply because the member wasn’t covered at the time of service. Another 9% are denied for lack of a referral or prior authorization. Both problems are preventable at intake.

Step 2: Understand the Three Code Sets

Medical billing relies on three standardized code systems that work together. Each one describes a different piece of the encounter.

  • ICD-10-CM codes describe the diagnosis. These are used by every provider in every healthcare setting and are maintained by the CDC. They answer the question: why did the patient need care?
  • CPT codes describe the service or procedure the provider performed. Maintained by the American Medical Association, CPT codes are divided into sections covering evaluation and management visits, surgery, radiology, anesthesiology, and pathology/lab work. They answer: what did the provider do?
  • HCPCS Level II codes cover products, supplies, and services that CPT codes don’t capture. This includes durable medical equipment (wheelchairs, oxygen tanks), prosthetics, orthotics, ambulance services, and certain drugs. If a patient received an item rather than a procedure, it likely gets a HCPCS Level II code.

Accurate coding is the foundation of the entire billing process. The diagnosis code must support the procedure code, a concept called “medical necessity.” If a provider bills for a knee MRI but the diagnosis code indicates a sore throat, the claim will be rejected. Learning to match diagnoses to procedures correctly is one of the core skills in medical billing.

Step 3: Fill Out the Claim Form

Once codes are assigned, the next step is completing the claim form. There are two standard forms, and which one you use depends on the type of provider.

The CMS-1500 is the form used by professional providers: physicians, surgeons, therapists, and other individual clinicians billing for their services. The UB-04 is used by institutional providers like hospitals, skilled nursing facilities, and hospital-based ambulatory surgical centers billing facility charges. In some settings, like an ambulatory surgical center, both forms are used: the UB-04 for the facility’s charges and the CMS-1500 for the surgeon’s professional fee. When in doubt, check the specific payer’s guidance.

The claim form captures everything the insurance company needs: patient demographics, provider information, diagnosis codes, procedure codes, dates of service, and the charges for each line item. Most billing today is done electronically, so you’ll be entering this data into billing software rather than filling out paper forms.

Step 4: Submit Through a Clearinghouse

Claims rarely go directly from the provider’s office to the insurance company. Instead, they pass through a clearinghouse, which acts as a middleman that performs several critical functions.

First, the clearinghouse converts the claim data into a standardized electronic format that the specific payer can process. Different insurance companies may use different systems, and the clearinghouse handles that translation (a process called “normalization”). Second, it runs the claim through a process called “scrubbing,” which checks for errors, missing fields, invalid codes, and formatting problems before the claim ever reaches the payer. Catching a missing modifier or an invalid diagnosis code at this stage saves weeks of back-and-forth. Third, the clearinghouse transmits the claim securely, protecting the patient’s health information during transit.

After submission, the clearinghouse also tracks claim status, so you can see whether a claim was accepted for processing or kicked back immediately due to a formatting issue.

Step 5: Follow Up on Claims and Handle Denials

Submitting a claim doesn’t guarantee payment. Insurance companies review each claim and respond with a remittance advice (sometimes called an Explanation of Benefits) that shows what they’ll pay, what they adjusted, and what was denied.

Denials are common. KFF data from 2024 shows the most frequent reasons for in-network claim denials break down this way: 36% fall under miscellaneous or uncategorized reasons, 25% are purely administrative errors (wrong format, missing information, duplicate submissions), 13% involve services the plan simply doesn’t cover, 9% are due to missing referrals or prior authorizations, and 7% result from the patient not being covered.

The good news is that many denials are fixable. Administrative denials can often be corrected and resubmitted. Authorization-related denials may be resolved by obtaining retroactive approval. For denials you believe are incorrect, you can file a formal appeal with the insurance company, providing additional documentation to support the claim. Tracking denial patterns helps you fix recurring problems upstream, whether that’s a registration issue, a coding habit, or a payer-specific requirement your office keeps missing.

Step 6: Post and Reconcile Payments

When payment arrives, it needs to be posted accurately to the patient’s account. This means recording what the insurance paid, what adjustments were made (contractual write-offs based on the provider’s agreement with the payer), and what balance, if any, the patient owes. The patient’s responsibility might include a copay, coinsurance, or deductible amount.

If there’s a remaining patient balance, the billing office generates a statement. Good billing software lets patients view their balance and pay online through a patient portal, which speeds up collections significantly. When accounts go unpaid past a certain threshold, collection notices are sent.

Software That Makes It Work

Almost no one does medical billing on paper anymore. Billing software handles most of the workflow, and the features that matter most include electronic claims processing and submission, built-in claim scrubbing to catch errors before submission, claim tracking so you can monitor where each claim stands, a reporting dashboard that lets you track open bills, log payments and refunds, run patient statements, and monitor practice revenue, and an online payment portal integrated with the patient-facing side of the practice.

Many practices use billing software that’s integrated with their electronic health record system, which means diagnosis and procedure information flows directly from the clinical documentation into the billing module. This reduces manual data entry and the errors that come with it.

Privacy Rules You Must Follow

Medical billing involves constant handling of protected health information (PHI), which means HIPAA compliance is non-negotiable. The Privacy Rule applies to healthcare providers whether they submit claims directly or use a third-party billing service.

The core principle is straightforward: you cannot use or disclose a patient’s health information except in ways the Privacy Rule specifically permits. Billing falls under the “payment” category of permitted uses, so you’re allowed to share the information necessary to process and collect on claims. But you can’t access records you don’t need for your work, share information with unauthorized people, or transmit data through unsecured channels. Every person who touches billing data needs to understand these boundaries.

Getting Certified as a Medical Biller

You don’t legally need a certification to work in medical billing, but employers strongly prefer it. The most recognized credential is the Certified Professional Biller (CPB) offered by AAPC. The exam tests your ability to use CPT, ICD-10-CM, and HCPCS Level II code books, apply medical necessity standards, complete physician-based insurance claims from start to finish, manage accounts receivable and follow up on denials, understand different health insurance models and how they affect reimbursement, and navigate the legal and regulatory landscape of healthcare collections.

AAPC recommends a working knowledge of medical terminology and anatomy before sitting for the exam. Many community colleges and online programs offer preparatory courses that cover both the clinical vocabulary and the billing-specific skills.

Fee-for-Service vs. Value-Based Billing

Most medical billing follows the fee-for-service model: each service has a specific price, the provider performs the service, and the insurer pays based on pre-negotiated rates. This is the traditional workflow described throughout this article.

Value-based care is a growing alternative where providers are paid based on patient outcomes rather than the volume of services delivered. The billing mechanics are different, often involving bundled payments, shared savings calculations, or quality metric reporting. If you’re entering the billing field, you’ll primarily work in fee-for-service environments, but understanding value-based models is increasingly important as more payers adopt them.