Group A Streptococcus (Streptococcus pyogenes) is the common cause of pharyngitis, widely known as strep throat. An untreated infection risks serious complications, including acute rheumatic fever and post-streptococcal glomerulonephritis. Timely and accurate diagnosis is paramount for initiating appropriate antibiotic treatment and preventing these severe sequelae. Diagnostic testing distinguishes bacterial infections from common viral causes, ensuring antibiotics are prescribed only when necessary to combat antibiotic resistance. Two primary methods are currently used for rapid diagnosis: the Rapid Antigen Detection Test (RADT) and the more advanced Molecular Test.
The Rapid Antigen Detection Test Mechanism
The Rapid Antigen Detection Test (RADT) identifies specific proteins, or antigens, found on the surface of Group A Streptococcus (GAS) bacteria. The target is the Lancefield group A carbohydrate located in the bacterial cell wall. The process begins with a throat swab, which is chemically treated to extract the target antigens.
The extracted sample is applied to a testing strip and moves along a membrane via immunochromatography (lateral flow assay). If GAS antigens are present, they bind to colored, labeled antibodies embedded in the strip. This complex migrates until it reaches a test line where capture antibodies are immobilized, forming a visible band that indicates a positive result within five to ten minutes.
Because the RADT detects bacterial proteins rather than genetic material, it offers an immediate, point-of-care result. However, this direct detection method is limited in sensitivity and may fail to detect infections with a low bacterial count, potentially causing a false negative result.
The Molecular Test Mechanism
Molecular tests for Group A Streptococcus utilize Nucleic Acid Amplification Technology (NAAT), such as Polymerase Chain Reaction (PCR), to detect the bacterium’s unique genetic code. Unlike the RADT, this method searches for the specific DNA sequence of Streptococcus pyogenes. The throat swab specimen is first processed to extract and purify the nucleic acids.
Once the DNA is isolated, the defining feature of the molecular test—amplification—begins. Specific short DNA sequences, called primers, target and bind to the GAS DNA. If the target sequence is present, the NAAT instrument initiates cycles of heating and cooling that rapidly make millions of copies of the bacterial DNA.
This massive replication ensures that even a minimal amount of bacterial DNA is detected. The test typically uses fluorescent probes that attach to the accumulating DNA copies, allowing the machine to measure the signal in real-time. This highly sensitive method provides results generally ranging from 15 minutes to an hour.
Comparing Performance: Accuracy, Speed, and Cost
The differences in the underlying mechanisms translate directly into differences in performance across several metrics, primarily accuracy, speed, and cost. The molecular test is superior in sensitivity, demonstrating ranges from 93% to 100%, compared to the 70% to 90% range commonly seen with antigen tests. This means RADTs have a higher rate of false negatives, missing infections in truly positive patients.
Both tests generally have high specificity, meaning a positive result from either is highly reliable and rarely incorrect. High specificity helps ensure that patients without strep throat do not receive unnecessary antibiotics.
The RADT remains the fastest option, delivering point-of-care results in under ten minutes, allowing for immediate patient management decisions. Molecular tests take longer, typically requiring 15 minutes to an hour to complete the amplification process, though they are still faster than the traditional 24- to 48-hour culture.
Molecular tests require specialized, often expensive instrumentation and reagents for nucleic acid extraction and amplification. Conversely, RADTs are simpler, less expensive to manufacture, and can be easily performed in various clinical settings with minimal equipment. The increased cost and technical complexity of NAATs can limit their availability in smaller clinics.
Clinical Application: Guiding Treatment Decisions
The performance characteristics of the two tests dictate their roles in clinical practice and guide treatment decisions. The RADT’s high specificity and rapid turnaround time make it valuable for immediate triage. A positive RADT result provides sufficient certainty for a clinician to immediately prescribe antibiotics.
However, the RADT’s lower sensitivity means a negative result cannot always be trusted, especially in children who are at the highest risk for developing rheumatic fever. Medical guidelines often recommend a “two-step” approach for children: performing the RADT first, and if negative, following up with a more sensitive test, traditionally a throat culture or a molecular test.
The superior sensitivity of molecular testing has led to its use as a primary diagnostic tool, often replacing the need for a follow-up culture due to its ability to detect low bacterial loads. While beneficial, this high sensitivity also raises the possibility of detecting a GAS carrier state, where the patient harbors the bacteria without an active infection.

