Mupirocin is a topical antibiotic used primarily to combat Methicillin-resistant Staphylococcus aureus (MRSA). MRSA is a significant public health concern, often residing harmlessly in the nose or on the skin (colonization or carriage). This colonization can pose a serious risk, particularly in healthcare settings, as it can lead to severe infections, such as pneumonia or bloodstream infections, in vulnerable patients. Mupirocin is derived from the bacterium Pseudomonas fluorescens and is formulated as an ointment or cream for localized application. The drug’s main application is to eliminate the nasal carriage of MRSA, a process called decolonization, thereby reducing the chance of infection and transmission.
The Unique Mechanism of Action
Mupirocin’s effectiveness stems from its unique classification as a pseudomonic acid, which provides a distinct way to attack the bacterial cell compared to most other antibiotics. The drug operates by disrupting the bacteria’s ability to create the proteins necessary for its survival and growth by specifically targeting an enzyme called isoleucyl-tRNA synthetase (IleRS).
This enzyme links the amino acid isoleucine to a specific transfer RNA (tRNA) molecule, a necessary step before the amino acid can be added to a growing protein chain. Mupirocin acts as a competitive inhibitor, binding tightly to the IleRS active site and preventing the enzyme from performing its function. This blockage halts the incorporation of isoleucine, effectively stopping the entire protein synthesis process.
The drug’s mechanism is highly selective, targeting the bacterial version of the IleRS enzyme without significantly affecting the human version. This specificity limits systemic side effects, allowing the drug to be used topically to achieve very high local concentrations where the bacteria reside. At low concentrations, mupirocin is bacteriostatic (stops growth), but at the high concentrations achieved topically, it becomes bactericidal (actively kills the susceptible bacteria).
Protocols for Clinical Application
Mupirocin is primarily utilized in two clinical scenarios: treating minor skin infections and, more importantly for MRSA control, decolonization. For superficial skin infections like impetigo caused by susceptible Staphylococcus aureus or Streptococcus pyogenes, the mupirocin cream or ointment is typically applied to the affected area three times daily for five to ten days.
The most common and impactful use of mupirocin in combating MRSA involves the eradication of nasal colonization. The anterior nares (nostrils) are the most frequent site of MRSA carriage, and eliminating the bacteria from this site significantly reduces the risk of subsequent infection. For nasal decolonization, a 2% mupirocin ointment is applied inside each nostril.
The typical protocol involves applying a small, pea-sized amount of the ointment twice a day for five days. Patients use a clean applicator, like a cotton swab, to apply the ointment to the inner surface of each nostril. After application, gently pressing the nostrils together and massaging them for about a minute helps ensure the medication is spread throughout the nasal lining.
Decolonization is often part of a broader strategy, particularly in healthcare settings or for patients with recurrent infections, which may include concurrent use of antiseptic body washes containing chlorhexidine. Pre-surgical decolonization programs, where patients known to carry MRSA receive mupirocin before an operation, have been widely adopted to lower the risk of post-operative wound infections. It is important to strictly follow the five-day course, as improper or prolonged use can contribute to the development of drug resistance.
The Development of Bacterial Resistance
The effectiveness of mupirocin is threatened by the bacteria’s ability to develop resistance, a process that healthcare providers closely monitor. Resistance arises when S. aureus mutates or acquires new genetic material that alters the drug’s target, the isoleucyl-tRNA synthetase enzyme. This adaptation allows the bacteria to continue synthesizing proteins even in the presence of the antibiotic.
Mupirocin resistance is categorized into two main types based on the minimum inhibitory concentration (MIC) required to stop bacterial growth. Low-level resistance (LLMR) is linked to a mutation in the bacteria’s native ileS gene, which slightly alters the enzyme’s structure. Isolates with LLMR typically have MICs between 8 and 64 µg/mL.
High-level resistance (HLMR) is a greater clinical concern, caused by the acquisition of a mobile genetic element (usually a plasmid) that carries a separate gene called mupA. The mupA gene encodes a new, resistant version of the IleRS enzyme that is unaffected by mupirocin. This plasmid-mediated resistance is concerning because it can be easily transferred between different bacterial strains, and isolates with HLMR have significantly higher MICs, often 512 µg/mL or greater. Increased use of mupirocin, particularly in hospitals, has been linked to rising resistance rates, which can lead to treatment failure in decolonization efforts.

