What Are the Side Effects of the Flu and COVID Vaccines?

Understanding the body’s expected response helps set accurate expectations when preparing for a vaccine. A reaction after vaccination signals that the immune system is successfully learning to recognize a potential threat without causing illness. It is important to distinguish between a common, temporary “side effect,” which is a normal indicator of the immune response, and a serious “adverse event,” which is a severe, health-threatening outcome that occurs extremely infrequently. While both the flu and COVID-19 vaccines have been monitored, their specific reaction profiles differ slightly due to the distinct technologies used.

Expected Reactions: Comparing Flu and COVID Vaccines

The most frequently reported reactions for both the flu and COVID-19 vaccines are local, occurring directly at the injection site. These typically include pain, tenderness, redness, or minor swelling on the arm. These local symptoms often begin within hours of vaccination and usually resolve completely within a day or two.

Differences become more noticeable when comparing systemic reactions, which affect the body beyond the injection site. The standard seasonal flu vaccine may cause mild, temporary systemic symptoms such as a low-grade fever, headache, or muscle aches. These flu-like symptoms are generally infrequent and mild compared to those seen after a COVID-19 vaccine dose.

Systemic reactions are more pronounced and common with messenger RNA (mRNA) COVID-19 vaccines, particularly following the second dose or a booster shot. Recipients frequently report more significant fatigue, chills, headache, and sometimes joint pain. This stronger reaction profile suggests increased reactogenicity, indicating a robust immune system response to the vaccine’s components.

Understanding the Cause of Post-Vaccination Symptoms

The temporary discomfort experienced after a vaccine is not a mild form of the illness itself, as vaccines do not contain a live, infectious virus capable of causing disease. Instead, these symptoms result from the innate immune system initiating an inflammatory response, a necessary step in generating protection. This process, often called reactogenicity, confirms that the body is successfully recognizing the vaccine’s antigen or genetic material.

Systemic symptoms, such as fever and body aches, are triggered by the release of inflammatory signaling molecules, including cytokines and prostaglandins, by immune cells. These chemical messengers circulate throughout the body, inducing temporary, flu-like conditions that help mobilize the immune system to build long-term memory. Local pain occurs as nearby blood vessels widen and immune cells rush to the injection site, causing swelling and tenderness as they interact with vaccine components.

Identifying Rare or Serious Adverse Events

Though common reactions are mild and transient, public health surveillance systems monitor for extremely rare, serious adverse events associated with both vaccine types. For the seasonal influenza vaccine, one association is Guillain-Barré Syndrome (GBS), a neurological disorder where the immune system damages nerve cells. The risk of GBS following a flu shot is estimated to be very low, adding approximately one to three additional cases per million doses administered.

The COVID-19 vaccines, particularly those using novel technologies, have been associated with a few distinct rare events. Myocarditis and pericarditis (inflammations of the heart muscle and its outer lining) have been rarely observed, primarily in young males after receiving an mRNA vaccine, most often following the second dose. The highest incidence rate is estimated in male adolescents aged 16 to 17 years, reaching up to 75.9 cases per million second doses, though the rate is much lower across the general population.

Another serious adverse event is Thrombosis with Thrombocytopenia Syndrome (TTS), involving rare blood clots accompanied by low platelet counts. This was specifically linked to certain viral vector vaccines, such as the Janssen (Johnson & Johnson) vaccine. The reporting rate for TTS with the Janssen vaccine was approximately 3.83 cases per million doses, with higher rates observed in women under 50 years of age. These serious events are extremely infrequent, and the benefits of vaccination against severe illness remain overwhelmingly greater than the risk of these complications.

Managing Symptoms and When to Seek Medical Attention

The mild and expected post-vaccination symptoms typically last only 24 to 48 hours. Applying a clean, cool compress or moving the arm frequently can help reduce pain and swelling at the injection site. Staying well-hydrated and ensuring adequate rest are effective ways to support the body’s immune response.

Over-the-counter pain relievers, such as acetaminophen or ibuprofen, can be taken after vaccination to alleviate general aches, headaches, or fever. However, certain symptoms require immediate medical attention, as they may indicate a rare adverse event or a severe allergic reaction. These include:

  • Trouble breathing
  • Persistent pain or pressure in the chest
  • New confusion
  • Swelling of the face or throat
  • Any symptoms that are severe or last longer than 72 hours