Brown spots on corn on the cob signal a change in the kernels, moving away from their milky stage. Discolorations are caused by various factors, broadly grouped into two categories: biological sources that occur while the corn is still growing and environmental factors that happen after harvest. Understanding the specific cause of the brown spot helps determine the corn’s freshness, quality, and edibility.
Fungal and Pathogenic Sources
The most common biological cause of brown or black spots is the fungus Ustilago maydis, known as corn smut. This pathogen infects developing kernels in the field, transforming them into tumor-like growths called galls. Initially, these galls appear as grayish-white swellings, but they quickly mature and darken. The mature galls eventually rupture, releasing a mass of dark, powdery spores that are brown to black, causing the discoloration.
Other fungal diseases can also cause browning. Physoderma maydis causes Physoderma Brown Spot, presenting as small, yellow-to-brown lesions on leaves, sheaths, and sometimes the husks. This fungus requires warm, wet conditions for infection. While Physoderma rarely affects the cob directly, dark purple-to-black lesions on the leaf sheath and husk indicate the pathogen’s presence.
Rust diseases, such as Common Rust (Puccinia sorghi), create raised, cinnamon-brown pustules on the leaves and sheaths that darken as they age. Although rust primarily affects the foliage and stalk, its presence indicates stress that can indirectly impact the quality of the developing ear. These conditions are favored by high humidity, leading to spores that can mark the outer layers of the corn.
Handling and Storage Factors
Discoloration can occur after harvest due to physical damage or improper storage. Sweet corn is highly perishable, and its quality rapidly declines once picked. Mechanical damage or bruising during harvesting or transportation injures the kernel tissue. This cellular damage exposes compounds that rapidly oxidize when reacting with oxygen, leading to localized brown spots.
Temperature management is a primary concern. Fluctuating or overly low temperatures can cause chilling injury, even though sweet corn is generally stored optimally between 0°C and 1.5°C. Browning after cooking or cutting is often attributed to enzymatic browning, involving the enzyme polyphenol oxidase. When kernels are damaged, this enzyme reacts with phenolic compounds and oxygen, resulting in brown pigments.
Browning can also be hastened by the Maillard reaction, a chemical change between amino acids and reducing sugars that occurs at high temperatures. This reaction can turn corn kernels dark brown or reddish after boiling or roasting. This discoloration is a chemical change related to heat exposure and sugar content, not spoilage. Rapid cooling after harvest is necessary to slow the conversion of sugar to starch and preserve the kernel’s appearance.
Safety and Consumption Guidelines
The safety of consuming corn with brown spots depends entirely on the cause of the discoloration. Brown spots resulting from mechanical bruising, heat-related browning, or minor physiological stress are generally harmless. Kernels discolored by damage or oxidation may be tougher and less flavorful, but they do not pose a food safety risk. The affected area can often be cut away and the rest consumed.
The fungal growth known as corn smut, or huitlacoche, is a notable exception to discarding moldy food. In many cultures, particularly in Mexico, the immature, grayish-blue galls of Ustilago maydis are prized as an edible delicacy. However, most discoloration on commercial corn should be treated with caution, especially if it appears fuzzy, slimy, or has an off-odor.
Visible mold on soft foods like corn often indicates that the fungal network has spread throughout the ear, potentially producing harmful toxins. Discoloration accompanied by a sour smell, a slimy texture, or widespread fuzzy growth requires discarding the entire ear. The USDA advises throwing out soft, moldy produce because fungal filaments can penetrate deeply.
Minimizing Discoloration
Preventing brown spots involves careful management across the entire life cycle of the corn, from the garden to the kitchen.
Field Management
Gardeners should select corn varieties that possess genetic resistance to common fungal diseases like rust and smut. Environmental management is also important, including avoiding overhead irrigation that can splash spores. Maintaining well-balanced soil fertility is also key, as excessive nitrogen can increase the plant’s susceptibility to smut.
Post-Harvest Cooling and Storage
Post-harvest handling requires immediate and continuous temperature control to slow down the biochemical processes that lead to discoloration. Sweet corn should be cooled to a temperature near 0°C (32°F) as rapidly as possible after picking, ideally within an hour. This extreme cooling significantly slows the conversion of sugar to starch, which is a major factor in quality deterioration. Retailers and consumers should aim to store corn at high humidity, typically 95% to 98%, to prevent dehydration and kernel denting.
Handling and Processing
Minimizing physical impact during handling, transportation, and storage is necessary to prevent bruising that initiates enzymatic browning. For corn that will be cut off the cob, a quick blanching process can deactivate the enzymes responsible for oxidation. This involves briefly submerging the ears in boiling water and then immediately cooling them in ice water. This step is particularly helpful for kernels intended for freezing, maintaining their bright color and fresh flavor for long-term storage.

