The appearance of brown spots on tomato leaves is one of the most common issues for gardeners, signaling a problem that requires prompt investigation. Distinguishing between a fungal infection, a bacterial disease, or an environmental stressor is crucial for saving the plant. Because many different causes present with similar initial symptoms, an accurate diagnosis based on the spot’s characteristics is the first step toward effective intervention and treatment.
Identifying the Type of Spot
Diagnosis begins with a careful visual assessment of the size, shape, and distribution of the lesions on the plant foliage. The location of the spots is often the first clue. Many soil-borne diseases first manifest on the older, lower leaves before progressing upward, while spots on the newest, upper growth may indicate a nutrient deficiency or environmental issue.
The geometry of the brown spots offers another layer of distinction, helping to separate bacterial issues from fungal ones. Fungal diseases often produce circular lesions, sometimes developing distinct target-like concentric rings as the infection progresses. Bacterial diseases, in contrast, are frequently constrained by the leaf veins, leading to a more angular or irregular appearance.
Spot color and texture provide further diagnostic cues. Fungal spots, such as those from Septoria leaf spot, are typically small, circular lesions with dark borders and a pale center. A defining feature of some fungal infections is the presence of tiny, black dots (pycnidia) visible within the light-colored center. Conversely, bacterial spots are usually very small, dark, and may initially appear water-soaked or greasy before turning dark brown or black.
Fungal and Bacterial Causes
The most serious threats to tomato foliage are biotic pathogens, including fungi like early blight and Septoria leaf spot, and the bacteria causing bacterial spot.
Early Blight
Early blight, caused by the fungus Alternaria solani, typically starts on the oldest leaves. These lesions are dark brown to black, growing up to about 1.3 cm in diameter, and develop the characteristic “bullseye” or target pattern of dark concentric rings. The fungus survives on infected plant debris and in the soil, spreading via splashing water from rain or irrigation.
Septoria Leaf Spot
Septoria leaf spot, caused by Septoria lycopersici, thrives in wet, humid conditions and affects plants at any stage. Unlike the larger lesions of early blight, Septoria spots are smaller, usually between 2 to 5 mm, and possess a distinctive light gray or tan center surrounded by a dark border. The spores emerge from the pycnidia in the center of the spots, easily spreading to nearby foliage when water is present.
Bacterial Spot
Bacterial spot, caused by various Xanthomonas species, is challenging because it can be seed-borne and spreads rapidly in warm, wet conditions. The leaf spots are small, dark, and often have an irregular or angular shape. The bacteria enter the plant through natural openings or wounds. Infection is favored by temperatures between 24°C and 30°C and long periods of leaf wetness. While fungal spots often cause leaves to yellow and drop, bacterial spots can cause a scorched appearance as lesions coalesce into larger necrotic areas.
Environmental and Nutritional Causes
Not all brown spots originate from a living pathogen; several non-infectious, abiotic factors can produce similar symptoms that are frequently mistaken for disease.
Nutritional Issues
A potassium deficiency is a common nutritional issue that manifests as discoloration on older leaves, mimicking fungal infections. This mobile nutrient is pulled from the older tissues to support new growth and fruit development. This results in marginal chlorosis—a yellowing that begins at the edges of the lower leaves—which then progresses to brown, scorched edges.
Environmental Stressors
Sunscald creates large, irregular brown or white patches on fruit and leaves after sudden exposure to intense sunlight. This often occurs when a plant loses lower foliage, exposing previously shaded areas to direct radiation. Edema is another disorder caused by the plant taking up water faster than it can transpire it, leading to ruptured cells and small, rusty-brown spots on the leaf underside. These environmental and nutritional problems must be differentiated from diseases because they do not respond to chemical controls like fungicides or bactericides.
Treatment and Long-Term Management
Addressing brown spots requires a two-pronged approach: immediate treatment and long-term preventative measures.
Immediate Treatment
For immediate control, infected leaves should be carefully pruned and removed from the garden area to reduce the pathogen load. If the cause is fungal, an appropriate fungicide can be applied. Organic options often contain copper or sulfur, while synthetic options may use active ingredients like chlorothalonil. Bacterial spot requires a different chemical approach, typically necessitating the use of copper-based sprays, as fungicides are ineffective against bacteria. Chemical applications are most effective when used preventatively or at the first sign of symptoms, as they cannot reverse existing damage.
Long-Term Prevention
Long-term management focuses on cultural practices to minimize the conditions pathogens need to thrive:
Remove and dispose of infected plant debris promptly.
Increase air circulation by ensuring proper plant spacing and staking or caging plants.
Use targeted watering techniques, such as drip irrigation or soaker hoses, to keep leaves dry and prevent water splash.
Implement a three- to four-year crop rotation, as many pathogens can survive in the soil for multiple seasons.

