What Causes Sore Throat and Cough: Viruses to Reflux

A sore throat paired with a cough usually means something is irritating or inflaming your upper airway. The most common cause is a viral respiratory infection, but allergies, acid reflux, dry air, and bacterial infections can all produce the same combination. Understanding which category your symptoms fall into helps you figure out whether you need to ride it out, make changes at home, or get tested.

Viral Infections: The Most Common Cause

The common cold, flu, COVID-19, and acute bronchitis are responsible for the vast majority of sore throat and cough episodes. These infections inflame the lining of your throat and airways, triggering pain when you swallow and a cough as your body tries to clear irritated tissue and excess mucus. Most viral sore throats come with other familiar symptoms: runny nose, sneezing, mild body aches, or fatigue.

Acute bronchitis, sometimes called a chest cold, produces both symptoms and can linger. The CDC notes that symptoms last less than three weeks, but the cough often hangs on well after the sore throat has resolved. The frustrating part is that antibiotics don’t work against any of these viruses. Rest, fluids, and over-the-counter pain relief are the standard approach.

Current COVID variants deserve special mention. The Nimbus variant, circulating in 2025, is known for causing a sharp, “stabbing” sore throat that’s especially painful when swallowing, along with a mild cough and persistent fatigue. If your sore throat feels unusually intense, a COVID test is worth taking, particularly since you can spread the virus to others during the early days of infection.

Postnasal Drip and Allergies

When your nose produces more mucus than usual, the excess drips down the back of your throat. This postnasal drip irritates the tissue it flows over, causing a sore, scratchy feeling and sometimes swelling around the tonsils. The mucus also triggers a persistent, tickling cough as it pools in the back of your throat. It’s one of the most common reasons people have a cough that won’t quit even though they don’t feel “sick.”

Allergies are a major driver of postnasal drip. If you’re sensitive to pollen, dust mites, pet dander, or mold, your immune system responds to these allergens by ramping up mucus production and inflaming nasal tissue. Research shows that people with allergic rhinitis have a sensitized cough reflex, meaning their bodies react more strongly to even mild airway irritation. This sensitization gets worse during allergy season, which explains why your cough may be barely noticeable in winter but constant in spring. The process is driven by histamine and other inflammatory signals stimulating sensory nerves in your nasal passages, which then lower the threshold for triggering a cough throughout your airway.

The telltale signs that allergies are behind your symptoms: itchy or watery eyes, sneezing in clusters, symptoms that follow a seasonal pattern or worsen around specific triggers, and the absence of fever.

Acid Reflux You Might Not Feel

Stomach acid doesn’t always announce itself with heartburn. In a condition called laryngopharyngeal reflux (often called “silent reflux”), acid travels up past the esophagus and reaches the throat and voice box. This causes a chronic sore throat, hoarseness, a feeling of something stuck in your throat, and a dry cough that doesn’t produce much mucus. You may never feel the classic burning sensation in your chest.

Silent reflux is more common than most people realize. Studies estimate that 10 to 20 percent of people with a chronic cough have reflux as the underlying cause. In one study that used 24-hour monitoring to measure acid reaching the throat, reflux was detected in over half of patients who came in for a chronic cough. If your sore throat and cough have persisted for weeks without any sign of infection, and symptoms are worse after meals or when lying down, reflux is a strong possibility.

Dry Air and Environmental Irritants

Breathing dry air pulls moisture from the mucous membranes lining your throat and airways. The result is a raw, scratchy throat and a dry cough, especially noticeable when you wake up in the morning during winter months with the heat running. Smoke, chemical fumes, heavy pollution, and even strong cleaning products can cause similar irritation.

Keeping indoor humidity between 30 and 50 percent helps prevent this. A simple hygrometer (available for a few dollars) can tell you where your home falls. If it’s too low, a humidifier in your bedroom makes a noticeable difference, particularly overnight when you’re breathing through your mouth.

Strep Throat: When Bacteria Are the Cause

Bacterial infections account for a smaller share of sore throats than most people assume, roughly 5 to 15 percent in adults. Strep throat is the main bacterial culprit, and it has a distinctive profile that actually helps distinguish it from viral infections. Doctors use a set of criteria to gauge the likelihood: fever above 100.4°F, swollen and tender lymph nodes at the front of the neck, white patches or pus on the tonsils, and notably, the absence of a cough.

That last point is key. If you have a significant cough alongside your sore throat, strep is less likely. Strep tends to cause isolated, severe throat pain without the runny nose, cough, and congestion that come with viral infections. When strep is suspected, a rapid antigen test can confirm it in minutes. These tests catch about 86 percent of true strep cases and are highly reliable when they come back positive, with a 96 percent specificity rate. A positive result means antibiotics are appropriate and will shorten the illness and prevent complications.

Symptoms That Need Urgent Attention

Most sore throat and cough combinations resolve on their own within a week or two. But a few warning signs point to something more serious. Epiglottitis, a swelling of the tissue that covers your windpipe during swallowing, is a medical emergency. It can come on quickly and cause difficulty breathing, difficulty swallowing, drooling, and a high-pitched whistling sound when breathing in (called stridor). In adults, a muffled or hoarse voice and the sensation of not being able to get enough air are hallmarks. This condition requires emergency care.

Other reasons to seek prompt evaluation: a sore throat lasting longer than two weeks without improvement, a visible lump or swelling on one side of the throat (which may suggest an abscess), difficulty opening your mouth, blood in your saliva or phlegm, or a high fever that doesn’t respond to fever reducers. A cough persisting beyond three weeks, especially without an obvious cause like allergies, also warrants a closer look to rule out conditions like asthma, reflux, or less common infections.