What Is a Heterozygous Pathogenic Variant?

A gene is a specific segment of DNA that provides instructions for making a protein. Every person inherits two copies of most genes, one from each biological parent. A heterozygous pathogenic variant describes a situation where a person has inherited one altered copy of a gene that is sufficient to disrupt normal function and cause a health condition. This single altered copy acts in a dominant fashion, meaning the presence of the one normal copy is not enough to maintain full health. Understanding this specific genetic status is the first step toward managing potential health implications for an individual and their family.

Defining the Variant and Allele Status

The term “heterozygous pathogenic variant” defines a person’s genetic status and the nature of the change in their DNA. Every gene is represented by two versions, called alleles, one inherited from the mother and one from the father. A person is heterozygous when the two inherited alleles are different: one is the standard, functional copy, while the other allele carries the genetic alteration, or variant.

The word “pathogenic” means the variant has been scientifically classified as disease-causing or likely disease-causing. This classification is based on strong evidence, such as the variant being absent from large databases of healthy populations and its consistent association with a known disorder in clinical reports. This status is distinct from a “variant of uncertain significance” (VUS), where there is not enough information to determine if the change is harmless or disease-causing.

This status contrasts with a homozygous pathogenic variant, where a person inherits an altered allele from both parents. For a heterozygous pathogenic variant to cause a condition, it must follow a dominant pattern, meaning only one altered copy is required for the condition to manifest. If the variant were recessive, the single normal copy would generally be sufficient to prevent the disease, and the person would be an unaffected carrier.

How One Altered Gene Copy Causes Illness

A single altered gene copy leads to disease typically through one of two primary categories: haploinsufficiency or the dominant negative effect. In a healthy state, the two working alleles produce a full supply of functional protein that the body needs for a specific task. When one allele carries a pathogenic variant, the total amount or quality of the resulting protein is severely compromised.

Haploinsufficiency

Haploinsufficiency occurs when the single remaining normal copy of the gene is unable to produce enough protein for the cell or tissue to function correctly. The term means “half-is-not-enough,” as the 50% reduction in functional protein levels is sufficient to cause symptoms. This mechanism often affects genes encoding proteins involved in structural components or signaling pathways, which are sensitive to changes in concentration.

Dominant Negative Effect

The dominant negative effect occurs when the altered protein actively interferes with the function of the normal protein produced by the healthy allele. This often happens with proteins that must assemble into complexes, such as structural proteins or multi-part enzymes. The faulty protein can bind to the normal protein subunits, creating a mixed complex that is entirely non-functional or toxic. For example, in some hereditary connective tissue disorders, the mutant protein interferes with the assembly of long, strong protein fibers, making the resulting structures weak and unstable.

Patterns of Inheritance and Family Risk

Conditions resulting from a heterozygous pathogenic variant typically follow an autosomal dominant pattern of inheritance. This means the gene is located on an autosome (non-sex chromosome), and only one altered copy is needed for the condition to express itself. When an affected heterozygous parent has a child with an unaffected partner, the child has a 50% probability of inheriting the pathogenic variant. This 50% risk is independent for every child and affects males and females equally.

Sometimes, the pathogenic variant appears for the first time in an individual and was not inherited from either parent; this is called a de novo mutation. In these cases, the affected individual still has a 50% chance of passing it on to their own children. For the parents of an individual with a de novo variant, the chance of recurrence in a subsequent child is generally very low, though a small risk remains due to the possibility of the variant being present in only some of a parent’s reproductive cells. Even among family members who inherit the exact same pathogenic variant, the severity of the condition can vary widely, a phenomenon known as variable expressivity.

Health Screening and Genetic Counseling

Identifying a heterozygous pathogenic variant initiates a systematic approach to health management that extends beyond the individual to their biological family. A specialized process called cascade screening is recommended, which involves systematically offering genetic testing to at-risk relatives of the person who first received the diagnosis. This is a highly effective way to find individuals who share the variant but are unaware of their risk, allowing for early intervention.

For example, in conditions like Familial Hypercholesterolemia, cascade screening allows for preventative measures, such as medication, to dramatically reduce the risk of premature heart disease. Medical management for an individual with an identified pathogenic variant often includes increased surveillance, such as more frequent imaging or blood work, and the implementation of specific preventative strategies tailored to the gene involved.

Genetic counselors play a central role in this process, providing non-directive guidance for individuals and families. They interpret complex genetic test results, explain the inheritance risks in an understandable way, and discuss the implications for the individual’s health and family planning. Counselors also provide support for communicating genetic risk to family members, ensuring the patient understands their right to privacy and the potential health benefit for relatives who may also carry the variant.