What Is the Difference Between a Gene and Allele?

The Gene: A Blueprint for Function

A gene represents the fundamental unit of heredity in all living organisms. Structurally, it is a specific segment of deoxyribonucleic acid (DNA) found at a fixed position along a chromosome. This organized arrangement of nucleotide bases contains the precise instructions needed for life processes.

The primary function of a gene is to act as a template for synthesizing a particular product, typically a protein or a functional RNA molecule. This process, known as gene expression, translates the genetic code into molecular structures that perform specific tasks within the cell. Proteins created this way might include enzymes, structural components, or signaling molecules.

A gene codes for a general characteristic or function, setting the stage for a trait. For instance, a gene might regulate blood type or direct the production of melanin, the pigment that gives color to skin and hair. The gene establishes the type of feature, such as “hair color,” but not the specific shade or intensity.

The Allele: Specific Variations on the Blueprint

If the gene provides the blueprint for a function, the allele represents the specific version of that blueprint. An allele is one of two or more alternative forms of a gene that arise from slight differences in the DNA sequence. These variations occur primarily through random mutations over time.

The existence of multiple alleles for a single gene is the source of genetic diversity within a population. While all members of a species possess the same set of genes, the specific combination of alleles they carry makes each individual unique.

Alleles determine the precise outcome of the general trait coded by the gene. For example, the gene for human hair texture exists, but specific alleles determine if the hair is straight, wavy, or tightly curled. Different alleles of the gene for flower color might lead to red, white, or purple petals in a plant species.

Physical Location and Context

To understand how genes and alleles interact, consider their placement on the chromosome structure. The specific, fixed location on a chromosome where a gene is always found is called its locus. This term provides a precise physical address for the genetic instructions.

Because humans and many other organisms are diploid, they inherit two complete sets of chromosomes—one set from each parent. This means that for every gene, an organism has two corresponding loci, one on the maternal chromosome and one on the homologous paternal chromosome.

An individual possesses two alleles for every gene, which occupy these two respective loci. These two alleles might be identical copies of the same version, or they could be two different versions, directly influencing the specific trait that develops.

How Alleles Determine Observable Traits

The observable characteristics of an organism, known as the phenotype, are determined by the interaction of the two alleles received for a particular gene. If an individual inherits two identical alleles for a gene, they are considered homozygous for that trait. Conversely, if they inherit two different alleles, they are heterozygous.

When an organism is heterozygous, the two different alleles often do not contribute equally to the final phenotype. In many cases, one allele will completely mask the effect of the other, a concept known as complete dominance. This masking allele is termed the dominant allele, while the hidden allele is called the recessive allele.

A dominant allele requires only one copy to express its associated trait in the phenotype. The recessive allele must be present in two copies—meaning the organism must be homozygous recessive—for its specific characteristic to become visible. This explains why a recessive trait can skip generations, only emerging when both parents contribute the masked allele.

A classic example involves Gregor Mendel’s work with pea plants. The allele for tall height is dominant over the allele for short height. A plant that is heterozygous (one tall allele and one short allele) will still grow tall because the dominant allele’s instruction is followed exclusively.

Not all allele interactions follow this simple dominant-recessive pattern. In incomplete dominance, the heterozygous phenotype is a blend of the two alleles, such as a red flower allele and a white flower allele resulting in a pink flower.

Another interaction is co-dominance, where both alleles are fully and simultaneously expressed in the phenotype. The human ABO blood group system is a clear illustration, as individuals with alleles for both A and B blood types will express both versions, resulting in AB blood.