What Lives in the Sewers? From Rats to Pathogens

The underground network of pipes designed to move human waste is an artificial ecosystem providing a dark, humid, and nutrient-rich environment for life. Characterized by high organic matter and constant flow, this subterranean world is a selective habitat for a unique range of organisms. The sewer system’s interconnected nature allows various creatures to thrive, finding shelter and a steady food supply in the wastewater flowing beneath our cities. Understanding these inhabitants, from microscopic pathogens to macroscopic rodents, reveals the complex ecological role of urban plumbing.

The Mammalian and Reptilian Residents

The most well-known large resident of the sewer system is the Norway rat (Rattus norvegicus), often called the “sewer rat.” These robust rodents are perfectly adapted for subterranean existence. They navigate in complete darkness using a powerful sense of touch, relying on whiskers and kinesthetic memory to map their territory. Norway rats are excellent swimmers, capable of treading water for days and holding their breath for extended periods, allowing them to traverse water-filled pipes and enter homes through the toilet trap.

Rats seek the sewer for its consistent temperature (warmer in winter, cooler in summer) and the abundant food washed down drains. Their strong incisors allow them to gnaw through materials like plastic pipes, wood, and soft concrete to create burrows or gain access to the surface. While the Norway rat is the primary species, the roof rat (Rattus rattus) is a more agile climber that also uses sewer vents and utility lines to move between the underground and above-ground environments.

The legend of large reptiles like alligators living in city sewers is largely an urban myth, especially in colder northern climates where low temperatures prevent long-term survival. However, in warm climates like Florida, alligators and snakes are occasionally found using stormwater drains as pathways between natural bodies of water. These reptiles use the tunnels as corridors, and small alligators, often released as pets, are sometimes rescued from sewer systems.

The Arthropod Population

The humid, organic-rich sewer environment supports a significant population of invertebrates, primarily detritivores that feed on decaying matter. The American cockroach (Periplaneta americana) is a common occupant, favored by the system’s high humidity and warmth. These insects rely on the abundant sewage and the biofilm coating the pipe walls for sustenance and often use the sewer network to travel between buildings.

Another prevalent insect is the drain fly, also known as the moth fly (Psychodidae), which breeds in the gelatinous organic material lining the pipes. The larvae feed on bacteria and decaying matter in this biofilm, completing their life cycle in the stagnant water of infrequently used drains or catch basins. The Northern House Mosquito (Culex pipiens) also thrives here, as its larvae prefer to develop in stagnant water with high organic content, such as that found in sewer catch basins and treatment plant effluent.

The Invisible World of Pathogens

The sewer system is one of the largest reservoirs of pathogenic microorganisms, collecting waste from entire human populations. This waste provides an ideal, nutrient-rich culture medium for bacteria, viruses, and parasites, making the sewage stream a massive, flowing laboratory for microbial activity. Common bacterial genera include Escherichia coli and Salmonella, both capable of causing severe gastrointestinal illness.

Viruses, such as norovirus and hepatitis A, are shed in human waste and remain viable in the sewage. Parasitic protozoa like Giardia contribute to the microbial load, existing as resilient cysts flushed into the system. Beyond known pathogens, the sewer environment is a hotspot for the development of antibiotic resistance, containing high numbers of antibiotic-resistant bacteria (ARB) and antibiotic resistance genes (ARGs).

The constant mixing of human-derived and environmental bacteria, along with residual antibiotics in the wastewater, creates a selective pressure. This facilitates the transfer of ARGs between different bacterial species through horizontal gene transfer. Genera such as Arcobacter and Acinetobacter are often dominant in the sewer microbiome and carry clinically relevant resistance genes, acting as persistent underground incubators for drug-resistant traits.

Public Health Risks and Mitigation

The sewer inhabitants pose public health risks by serving as vectors and compromising infrastructure integrity. Rats and cockroaches, having traveled through sewage, carry pathogens on their bodies, which they can transfer to food preparation surfaces or living spaces upon entering a building. Significant health risks also arise from sanitary sewer overflows (SSOs). SSOs occur when heavy rainfall overwhelms the system, releasing untreated wastewater and its concentrated load of bacteria, viruses, and parasites into the environment.

Beyond disease transmission, larger creatures cause structural problems leading to overflows and leaks. Rats gnaw through sewer lines, creating new entry and exit points. Tree roots seek water and nutrients in the pipes, compromising the joints and walls of the system. This damage weakens pipes, making them susceptible to collapse and allowing sewage to contaminate surrounding soil and groundwater. Mitigation efforts include municipal maintenance focused on regular inspection and repair of aging infrastructure to prevent breaches. Simple public measures, such as installing physical barriers like non-return valves on house drains, can prevent rodents from migrating into private residences.