Why Do I Get Canker Sores in My Throat?

A canker sore, scientifically known as an aphthous ulcer, is a small, painful lesion that develops inside the mouth. These ulcers are non-contagious and typically present with a distinct appearance: a white or yellowish center surrounded by a bright red border. While canker sores are common on the inner cheeks, lips, or tongue, the occurrence of a sore deep in the throat raises a specific question about its nature. Understanding the characteristics of a true aphthous ulcer and differentiating it from other lesions that cause throat pain is the first step toward finding relief.

Differentiating True Canker Sores from Other Lesions

Minor aphthous ulcers are most often found on the non-keratinized, or soft, tissues of the mouth, such as the floor of the mouth or the buccal mucosa. These common lesions are usually less than 10 millimeters in diameter and heal spontaneously within one to two weeks without scarring. While the soft palate is sometimes affected, lesions rarely extend into the lower pharynx or deep throat.

When an ulcer appears deep in the throat area, it may indicate a less common form of aphthous ulceration called a major aphthous ulcer, or it may be a completely different condition. Major aphthae are larger than 10 millimeters and can occur on the soft palate and throat, often taking weeks or months to heal and sometimes leaving a scar. However, a sore throat accompanied by fever and multiple ulcers in the back of the mouth is more likely a viral infection, such as herpangina, which is caused by Coxsackievirus. These viral lesions typically present as small, blister-like spots on the tonsils and soft palate.

Common Biological and Environmental Triggers

The development of a canker sore is a localized, T-cell-mediated immune response where the body mistakenly attacks the cells of the oral lining. This immune dysregulation is triggered by a combination of genetic predisposition and various environmental factors. The precise mechanism involves the release of pro-inflammatory cytokines that lead to the localized destruction of the epithelial cells.

One common environmental trigger is local trauma to the oral tissues, often caused by aggressive toothbrushing, accidentally biting the cheek, or irritation from sharp foods or dental appliances. Additionally, certain toothpaste ingredients, particularly the detergent Sodium Lauryl Sulfate (SLS), can compromise the mucosal barrier. SLS is a denaturant that thins the protective mucin layer of the mouth, leaving the underlying tissue more susceptible to irritants and the inflammatory response. Switching to an SLS-free dentifrice can significantly reduce the frequency and duration of outbreaks in susceptible individuals.

Nutritional deficiencies can also play a role in compromising the integrity and repair capability of the oral mucosa. Low levels of B vitamins, such as Vitamin B12 and folate, as well as iron and zinc, have been linked to recurrent aphthous stomatitis. Vitamin B12 is particularly important for cellular repair and DNA synthesis, and a deficiency can impair the renewal of the oral lining. Addressing these deficiencies through diet or targeted supplementation can reduce the recurrence of these painful lesions.

Strategies for Pain Relief and Healing

Managing the discomfort of a canker sore primarily involves reducing pain and protecting the ulcerated area to promote faster healing. Over-the-counter topical anesthetics, such as those containing benzocaine, offer temporary relief by reversibly blocking nerve conduction at the site of application. Barrier products, like protective pastes or adhesive patches, cover the sore to shield it from irritation caused by food, saliva, and movement.

Simple home rinses can also facilitate a cleaner healing environment and soothe inflammation. A saltwater rinse, typically made by dissolving one teaspoon of salt in a half-cup of warm water, acts as a mild antiseptic and can help reduce swelling. Similarly, a baking soda rinse may help neutralize the mouth’s pH balance, which can alleviate inflammation. For its antiseptic properties, a diluted hydrogen peroxide solution can be gently dabbed on the sore to clean the area and remove dead cells.

For severe, large, or frequent ulcers, a medical professional may prescribe topical corticosteroids, such as a dexamethasone mouth rinse or a fluocinonide gel. These prescription treatments are applied directly to the lesion to suppress the localized inflammatory immune response and accelerate healing. Since these are powerful anti-inflammatory agents, their use is reserved for more intense outbreaks and carries a small risk of secondary fungal infection.

When to Consult a Medical Professional

While most canker sores are benign and resolve on their own, certain signs warrant an evaluation by a dentist or physician to rule out other, more serious conditions. A medical consultation is appropriate if a single ulcer is unusually large or lasts longer than two weeks without showing signs of improvement. Sores that are unresponsive to over-the-counter treatments or home remedies should also be examined.

It is important to seek professional help if the oral ulcers are accompanied by systemic symptoms, such as an unexplained fever, a skin rash, eye inflammation, or difficulty swallowing that interferes with hydration. These accompanying symptoms may suggest an underlying systemic disease, such as an inflammatory bowel condition or a more complex immune disorder. Any ulceration that appears to be spreading rapidly or is causing severe, debilitating pain should be promptly assessed.