A strong ammonia or “cat pee” odor in feces often causes concern, but it results from an accumulation of nitrogenous waste products within the waste stream. This distinct, pungent smell occurs when the body cannot fully process or excrete nitrogen, which is primarily derived from protein. Understanding the mechanisms that create this high-nitrogen waste is the first step toward addressing the issue.
The Chemistry Behind the Ammonia Smell
The characteristic “cat pee” odor is directly attributable to ammonia, a volatile compound composed of nitrogen and hydrogen. Ammonia is a natural byproduct of protein metabolism, but it is usually processed before causing a strong odor in the stool.
Unabsorbed proteins and amino acids travel to the large intestine, where gut microbiota break them down. Specific bacteria use enzymes like urease to convert nitrogen-containing compounds into ammonia gas. If ammonia production outpaces the body’s ability to absorb and convert it into less toxic substances like urea, the excess nitrogen is expelled, creating the strong smell.
Dietary and Hydration Factors
Many cases of ammonia-smelling stool are linked to simple, non-pathological dietary factors. A diet significantly high in protein, particularly from sources like whey supplements or excessive meat, introduces a substantial nitrogen load. When protein intake exceeds the small intestine’s capacity to fully absorb amino acids, excess nitrogenous material passes into the colon. This excess nitrogen fuels ammonia-producing bacteria, leading to increased volatile ammonia gas production.
Inadequate water intake also intensifies the odor. Less fluid content in the stool means the ammonia and other odorous compounds are less diluted and therefore more pungent. Foods rich in sulfur or nitrogen, such as certain cruciferous vegetables or preserved meats, can also exacerbate the odor. Adjusting the ratio of protein to fiber and carbohydrate intake often provides a simple solution for reducing the amount of nitrogen reaching the colonic bacteria.
Underlying Metabolic and Digestive Issues
If dietary changes fail to resolve the ammonia odor, the cause may involve internal processing systems related to nutrient absorption and waste detoxification. Conditions that prevent the proper breakdown or absorption of food in the small intestine, such as Celiac disease or Crohn’s disease, allow undigested protein to pass into the colon. This undigested protein feeds the ammonia-producing bacteria, leading to malabsorption-related increases in stool ammonia.
The liver and kidneys play the central role in managing the body’s nitrogenous waste. The liver converts toxic ammonia into urea, which is then safely excreted by the kidneys. Impairment of either organ can significantly disrupt this process.
In cases of liver dysfunction, the urea cycle may be compromised, causing ammonia to bypass detoxification and accumulate in the bloodstream and subsequently in waste. Kidney dysfunction can also lead to an increased ammonia odor because the kidneys are less efficient at excreting urea and other nitrogenous compounds. An accumulation of these compounds in the body can result in more nitrogen being available for bacterial conversion to ammonia in the gut.
When to Consult a Doctor
While many instances of ammonia-smelling stool are benign and diet-related, certain accompanying signs warrant prompt medical evaluation. The persistence of the odor despite making clear changes to protein intake and increasing hydration suggests an underlying issue that requires diagnosis. Medical consultation is recommended if the strong odor is coupled with unexplained weight loss or significant changes in bowel habits, such as chronic diarrhea.
Red flag symptoms include:
- Steatorrhea, which is the presence of pale, bulky, and fatty stools that can signal severe malabsorption.
- Severe abdominal pain.
- Persistent fatigue.
- Jaundice, a yellowing of the skin or eyes, which could indicate liver or kidney impairment.
A doctor can perform blood tests to check liver and kidney function and stool analysis to investigate potential malabsorption disorders.

